density: unit of the density if isDensity=True or None.length: physical unit of grid edges (Angstrom or nm).False: grid is a histogram with counts Īpplying Density.make_density`() sets it to True.Supplying an AtomGroup, then use the run() method: , first create the DensityAnalysis object by The trajectory is already appropriately treated for periodic boundaryĪrtifacts and is suitably superimposed to provide a fixed reference frame) To generate the density of water molecules around a protein (assuming that Protein on a reference structure so that one can study the solvent
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